Stem-loop mes-MIR399c

Accession

MI0024323

Description

Manihot esculenta mes-MIR399c precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

7 open access papers mention mes-MIR399c
(9 sentences)

Sequence

caggguaaacucuccauuggcaggcagccacuuacagaacuaauuugcauuguuugguuuagugugcccucUGCCAAAGGAGAUUUGCCCGG
..(((((((.(((((.((((((((..((((((....(((((((..........))))))))))).))..)))))))).))))))))))))..

Structure

ca       c     a        ca  -    uaca       uuug 
  ggguaaa ucucc uuggcagg  gc cacu    gaacuaa    c
  ||||||| ||||| ||||||||  || ||||    |||||||     
  CCCGUUU AGAGG AACCGUcu  cg guga    uuugguu    a
GG       -     A        cc  u    ----       uguu 

Annotation confidence Not enough data

Genome context

scaffold10535: 11452-11543 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mes-MIR399c

Mature mes-miR399c

• Accession: MIMAT0029281
• Description: Manihot esculenta mes-miR399c mature miRNA
• Sequence: 72 - UGCCAAAGGAGAUUUGCCCGG - 92
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269