Stem-loop mes-MIR477i

Accession

MI0024331

Description

Manihot esculenta mes-MIR477i precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

3 open access papers mention mes-MIR477i
(6 sentences)

Sequence

aaggcauuuugauuguucACUCUCCCUCAAGGGCUUCCGgcagugccagacauaugcgugaauggcgagcuggagguccucggggagaguggacaauauuacugucu
.(((((.....((((((((((((((((..((((((((((((..(((((..(((....)))..))))).)))))))))))).)))))))))))))))).....)))))

Structure

a     uuuug                CA            ag     ga   a 
 aggca     auuguucACUCUCCCU  AGGGCUUCCGgc  ugcca  cau u
 |||||     ||||||||||||||||  ||||||||||||  |||||  |||  
 ucugu     uaacaggugagagggg  uccuggaggucg  gcggu  gug g
-     cauua                -c            -a     aa   c 

Annotation confidence Not enough data

Genome context

scaffold06716: 23382-23488 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mes-MIR477i

Mature mes-miR477i

• Accession: MIMAT0029289
• Description: Manihot esculenta mes-miR477i mature miRNA
• Sequence: 19 - ACUCUCCCUCAAGGGCUUCCG - 39
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269