Stem-loop mes-MIR477b

Accession

MI0024333

Description

Manihot esculenta mes-MIR477b precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

3 open access papers mention mes-MIR477b
(6 sentences)

Sequence

caagccauugguugcucaCUCUCCCUCAAGGGCUUCUGcauguaugcucuagcuagcucaugcauccacaaaugccaacaaaauagcaucagucagcugggguuaguaggcuagaagcucuugcaggggggcugaacaagccguggcuug
((((((((.(.(((.(((.((((((((((((((((((((......(((((((((.(((.((((......................)))).))).)))))))))......)).))))))))))).))))))).))).))).).))))))))

Structure

        u g   c   C       -           -  auguau         a   c    auccacaaau 
caagccau g uug uca UCUCCCU CAAGGGCUUCU Gc      gcucuagcu gcu augc          g
|||||||| | ||| ||| ||||||| ||||||||||| ||      ||||||||| ||| ||||           
guucggug c aac agu gggggga guucucgaaga cg      uggggucga uga uacg          c
        c g   a   c       c           u  gaugau         c   c    auaaaacaac 

Annotation confidence Not enough data

Genome context

scaffold03175: 114424-114573 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR477b

Mature mes-miR477b

• Accession: MIMAT0029291
• Description: Manihot esculenta mes-miR477b mature miRNA
• Sequence: 19 - CUCUCCCUCAAGGGCUUCUG - 38
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269