Stem-loop mes-MIR477e

Accession

MI0024336

Description

Manihot esculenta mes-MIR477e precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

3 open access papers mention mes-MIR477e
(7 sentences)

Sequence

auggcauucauuacucaCUCUCCCUCAAGGGCUUCUGcguguuucuggucgaaagaccaaauacuuacgcagaagaccuuagggagaguggauaauacuugccau
((((((...((((.(((((((((((.((((.((((((((((....(((((....)))))......)))))))))).))))))))))))))).))))...))))))

Structure

      uuc    c           C    G          --uuuc     g 
auggca   auua ucaCUCUCCCU AAGG CUUCUGcgug      ugguc a
||||||   |||| ||||||||||| |||| ||||||||||      |||||  
uaccgu   uaau ggugagaggga uucc gaagacgcau      accag a
      uca    a           -    a          ucauaa     a 

Annotation confidence Not enough data

Genome context

scaffold02226: 32349-32453 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR477e

Mature mes-miR477e

• Accession: MIMAT0029294
• Description: Manihot esculenta mes-miR477e mature miRNA
• Sequence: 18 - CUCUCCCUCAAGGGCUUCUG - 37
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269