Stem-loop mes-MIR477g

Accession

MI0024338

Description

Manihot esculenta mes-MIR477g precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

3 open access papers mention mes-MIR477g
(6 sentences)

Sequence

gacacugacauugcuagaaugguuagagaagcuuccaAUCUCCCUCAAAGGCUUCCAauauuccaggccauggaaauguuggagaccuuuggaggggauugaaggcuuacucucccaucauuuaaugcaagcauaguuuc
((.((((...((((..(((((((.((((((((((.((((((((.(((((((.(((((((((((((.....))).)))))))))).))))))).)))))))).)))))).))))...)))))))...))))...)))).))

Structure

  c    aca    -ua       --u    -      c        C       C          -   g 
ga acug   uugc   gaauggu   agag aagcuu caAUCUCC UCAAAGG UUCCAauauu cca g
|| ||||   ||||   |||||||   |||| |||||| |||||||| ||||||| |||||||||| ||| c
cu ugau   aacg   uuuacua   ucuc uucgga guuagggg gguuucc gagguuguaa ggu c
  u    acg    uaa       ccc    a      a        a       a          a   a 

Annotation confidence Not enough data

Genome context

scaffold01701: 705026-705165 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR477g

Mature mes-miR477g

• Accession: MIMAT0029296
• Description: Manihot esculenta mes-miR477g mature miRNA
• Sequence: 38 - AUCUCCCUCAAAGGCUUCCA - 57
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269