miRBase entry: mes-MIR828a

Stem-loop mes-MIR828a


Accession
MI0024345
Description
Manihot esculenta mes-MIR828a precursor miRNA
Gene family
MIPF0000544; MIR828

Literature search
3 open access papers mention mes-MIR828a
(6 sentences)

Sequence

ccuccuuguaauguuUCUUGCUCAAAUGAGUAUUCCAaucacaguugcauuuugcauacacaaucuccuuugcuuuucuuucaguaucuccacuguaaauuuugugguugcugaugcugcugugucucugagaugcucauuugagcaaguaauguuauaaugggagg
(((((((((((((((.((((((((((((((((((.((..((((((.(((((..(((..(((((.....(((((.....................)))))..)))))..))).))))).))))))....)).)))))))))))))))))).)))))))))..))))))

Structure
      --         U                  C  --au      u     uu   ua     ucucc     uuuucuuuc 
ccuccu  uguaauguu CUUGCUCAAAUGAGUAUU CA    cacagu gcauu  gca  cacaa     uuugc         a
||||||  ||||||||| |||||||||||||||||| ||    |||||| |||||  |||  |||||     |||||         g
ggaggg  auauuguaa gaacgaguuuacucguag gu    gugucg cguag  cgu  guguu     aaaug         u
      ua         u                  a  cucu      u     -u   ug     ---uu     ucaccucua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold06377: 35055-35221 [-]

Database links

Mature mes-miR828a

Accession MIMAT0029303
Description Manihot esculenta mes-miR828a mature miRNA
Sequence 16 - UCUUGCUCAAAUGAGUAUUCCA - 37
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269