Stem-loop mes-MIR828b

Accession

MI0024346

Description

Manihot esculenta mes-MIR828b precursor miRNA

Gene family

MIPF0000544; MIR828

Literature search

3 open access papers mention mes-MIR828b
(6 sentences)

Sequence

cccuuccauaggaaggccUCUUGCUCAAAUGAGUAUUCCAcaaucuucuuagaggaagacauaauuuuccacuuaaacgucguuucaauaguuuaccuucauuucuuucaguagucagucucucuaacaguuggaauggauacucauuuaggcaagaugcuuugcaugagaggg
(((((.(((.(.(((((.(((((((.(((((((((((......(((....)))((((((.....))))))..........(((((((((.(((...........((......))...........))).)))))))))))))))))))).))))))).))))).)))).)))))

Structure

     c   a g     c       C           CCAcaaucuucuuagaggaagacauaauuuuccacuuaaacgu         a   uaccuucauuu  uu 
cccuu cau g aaggc UCUUGCU AAAUGAGUAUU                                           cguuucaau guu           cu  c
||||| ||| | ||||| ||||||| |||||||||||                                           ||||||||| |||           ||   
gggag gua c uuucg agaacgg uuuacucauag                                           guaagguug caa           ga  a
     a   - g     u       a           -------------------------------------------         a   ucucucugacu  ug 

Annotation confidence Not enough data

Genome context

scaffold03581: 479735-479908 [-]

Mature mes-miR828b

• Accession: MIMAT0029304
• Description: Manihot esculenta mes-miR828b mature miRNA
• Sequence: 19 - UCUUGCUCAAAUGAGUAUUCCA - 40
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269