Stem-loop lja-MIR167a

Accession

MI0024374

Description

Lotus japonicus lja-MIR167a precursor miRNA

Gene family

MIPF0000023; MIR167_1

Sequence

acaaagaguugaguucacaagggaaaaagUGAAGCUGCCAGCAUGAUCUagcuuugguuagagaaagagguagagugcuaaugaauuaacugcuaacccugacuaggucaugcugcgacagccucacuccuuccuauuuggggacccaguugu
........(((.((((.((((((((..(((((.((((((((((((((((((....((((((((.......(((....))).........)).))))))....))))))))))))).).)))).)))))..)))))..))).)))).)))....

Structure

acaaagag   a    a   --     aa     A    - -             cuuu      -  --aaagagg   a 
        uug guuc caa  gggaa  agUGA GCUG C CAGCAUGAUCUag    gguuag ag         uag g
        ||| |||| |||  |||||  ||||| |||| | |||||||||||||    |||||| ||         |||  
        gac cagg guu  uccuu  ucacu cgac g gucguacuggauc    ccaauc uc         auc u
----uguu   c    g   ua     cc     c    a c             aguc      g  aauuaagua   g 

Annotation confidence Not enough data

Genome context

Chr1: 55857748-55857900 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR167a

Mature lja-miR167a

• Accession: MIMAT0029311
• Description: Lotus japonicus lja-miR167a mature miRNA
• Sequence: 30 - UGAAGCUGCCAGCAUGAUCU - 49
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154