miRBase entry: lja-MIR171a

Stem-loop lja-MIR171a


Accession
MI0024377
Description
Lotus japonicus lja-MIR171a precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
2 open access papers mention lja-MIR171a
(8 sentences)

Sequence

augaaguagcuauugcgauauuggcuugguucacucagacaaaacacauacacacagaaaauguggauuauauauauguuuugguuuUGAUUGAGCCGUGCCAAUAUCucacugcuacuucau
((((((((((...((.(((((((((.(((((((.((((((((((((.(((..((((.....)))).......))).)))))))..))))).))))))).))))))))).))..))))))))))

Structure
          uau  c         u       c     --       c   -----ca    g 
augaaguagc   ug gauauuggc ugguuca ucaga  caaaaca aua       caca a
||||||||||   || ||||||||| ||||||| |||||  ||||||| |||       |||| a
uacuucaucg   ac CUAUAACCG GCCGAGU AGUuu  guuuugu uau       gugu a
          -uc  u         U       U     ug       a   auauuag    a 


Annotation confidence Not enough data
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Genome context
Chr2: 26398110-26398232 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR171a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR171a

Accession MIMAT0029314
Description Lotus japonicus lja-miR171a mature miRNA
Sequence 88 - UGAUUGAGCCGUGCCAAUAUC - 108
Evidence not_experimental

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154