Stem-loop lja-MIR390a

Accession

MI0024384

Description

Lotus japonicus lja-MIR390a precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

1 open access papers mention lja-MIR390a
(10 sentences)

Sequence

ggagaaucuguuAAGCUCAGGAGGGAUAGCGCCaugauauauauugaugcaguuucuauugucuucaauauuggucuuuggCGCUAUCCAUCCUGAGUUUCAuggguucuuc
(((((((((((.((((((((((.(((((((((((.(((..(((((((.(((((....)))))..)))))))..)))..))))))))))).)))))))))).)))))))))))

Structure

           u          G           -u   au       -u     u 
ggagaaucugu AAGCUCAGGA GGAUAGCGCCa  gau  auauuga  gcagu u
||||||||||| |||||||||| |||||||||||  |||  |||||||  |||||  
cuucuuggguA UUUGAGUCCU CCUAUCGCggu  cug  uauaacu  uguua c
           C          A           uu   gu       uc     u 

Annotation confidence Not enough data

Genome context

Chr2: 34450643-34450754 [+]

Mature lja-miR390a-5p

• Accession: MIMAT0029322
• Description: Lotus japonicus lja-miR390a-5p mature miRNA
• Sequence: 13 - AAGCUCAGGAGGGAUAGCGCC - 33
• Evidence: experimental ; cloned [1], Northern [1]

Mature lja-miR390a-3p

• Accession: MIMAT0029323
• Description: Lotus japonicus lja-miR390a-3p mature miRNA
• Sequence: 82 - CGCUAUCCAUCCUGAGUUUCA - 102
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154