Stem-loop lja-MIR390b

Accession

MI0024385

Description

Lotus japonicus lja-MIR390b precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

1 open access papers mention lja-MIR390b
(10 sentences)

Sequence

guguggaaaaucuguaAAGCUCAGGAGGGAUAGCGCCauggauggucuggaucucuugcauuauuuguugugaucuucucuagCGCUAUCCAUCCUGAGUUUCAuggcuucuucauac
(((((((.((.((((.((((((((((.(((((((((..((((.((...(((((.(..(((.....))).).)))))))))))))))))))).)))))))))).)))).)).)))))))

Structure

       a  u    a          G         Ca    u  ucu     u uu   u 
gugugga aa cugu AAGCUCAGGA GGAUAGCGC  ugga gg   ggauc c  gca u
||||||| || |||| |||||||||| |||||||||  |||| ||   ||||| |  ||| a
cauacuu uu gguA UUUGAGUCCU CCUAUCGCg  aucu cu   ucuag g  ugu u
       c  c    C          A         --    -  ---     u -u   u 

Annotation confidence Not enough data

Genome context

Chr3: 17662578-17662695 [-]

Mature lja-miR390b-5p

• Accession: MIMAT0029324
• Description: Lotus japonicus lja-miR390b-5p mature miRNA
• Sequence: 17 - AAGCUCAGGAGGGAUAGCGCC - 37
• Evidence: experimental ; cloned [1], Northern [1]

Mature lja-miR390b-3p

• Accession: MIMAT0029325
• Description: Lotus japonicus lja-miR390b-3p mature miRNA
• Sequence: 84 - CGCUAUCCAUCCUGAGUUUCA - 104
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154