miRBase entry: lja-MIR397

Stem-loop lja-MIR397


Accession
MI0024386
Description
Lotus japonicus lja-MIR397 precursor miRNA
Gene family
MIPF0000120; MIR397

Literature search
1 open access papers mention lja-MIR397
(15 sentences)

Sequence

ucucagaugaauuguaaauucccauauuggauaaacauUAUUGAGUGCAGCGUUGAUGAaguccugaacugcauugugcuauaagggagaagccaaaugcuuuuaucgacgcugcacucaaucauguuuuuuagcaauaugguucaaucgugaga
(((((((((((..........((((((((...((((((.(((((((((((((((((((((.((((.....(((...))).....))))..(((.....)))))))))))))))))))))))).)))))).....))))))))))).))).)))))

Structure
     -   -   uuguaaauuc        --gau      U                     ------------g    gaacu   u 
ucuca gau gaa          ccauauug     aaacau AUUGAGUGCAGCGUUGAUGAa             uccu     gca  
||||| ||| |||          ||||||||     |||||| |||||||||||||||||||||             ||||     ||| u
agagu cua cuu          gguauaac     uuugua uaacucacgucgcagcuauuu             aggg     cgu  
     g   a   ----------        gauuu      c                     ucguaaaccgaag    aauau   g 


Annotation confidence Not enough data
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Genome context
Chr0: 31433003-31433157 [+]

Database links

Mature lja-miR397

Accession MIMAT0029326
Description Lotus japonicus lja-miR397 mature miRNA
Sequence 39 - UAUUGAGUGCAGCGUUGAUGA - 59
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154