miRBase entry: lja-MIR7522

Stem-loop lja-MIR7522


Accession
MI0024396
Description
Lotus japonicus lja-MIR7522 precursor miRNA


Sequence

uaAACUGCGGACAGGUUUUAUGACuaccgcauguuuaagugcggcagauggucaauuuuuuuuaauucucucugaauucucucugaauguuuauaaauucuuuguucuguccgcacuuuaauaugcggcagcacauauuugccuuucacaguuua
(((((((.(((.((((..((((.((.(((((((((.((((((((((((...............(((((.....)))))......((((........)))).....)))).)))))))).))))))))).))..))))...))))))).)))))))

Structure
       C   C    -UU    -A  a         u        -    ------------uggucaauuuuuuuu     u 
uaAACUG GGA AGGU   UAUG  Cu ccgcauguu aagugcgg caga                           aauuc c
||||||| ||| ||||   ||||  || ||||||||| |||||||| ||||                           ||||| u
auuugac cuu uccg   auac  ga ggcguauaa uucacgcc gucu                           uuaag c
       a   -    uuu    ac  c         u        u    uguuucuuaaauauuuguaagucucuc     u 


Annotation confidence Not enough data
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Genome context
Chr1: 7960657-7960811 [+]

Database links

Mature lja-miR7522

Accession MIMAT0029337
Description Lotus japonicus lja-miR7522 mature miRNA
Sequence 3 - AACUGCGGACAGGUUUUAUGAC - 24
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154