miRBase entry: lja-MIR7526e

Stem-loop lja-MIR7526e


Accession
MI0024405
Description
Lotus japonicus lja-MIR7526e precursor miRNA
Gene family
MIPF0001651; MIR7526


Sequence

guagcgguaacuaccgcaauuaaaauagcuguaacguccgcuAUCAAGGUAGCUGUAACUUCCgcuauuaagauagcaguuacagcuaucuugauagcggaaguuacagcuaucuugauagcggaaguuacugcuaucuugacugcgguaguuaccgcuau
((((((((((((((((((.((((.(((((.(((((.(((((((((((((((((((((((((((((((((((((((((.......))))))))))))))))))))))))))))))))))))))))).))))).))))).)))).))))))))))))))))))

Structure
                  a    a     u     g                                         ag 
guagcgguaacuaccgca uuaa auagc guaac uccgcuAUCAAGGUAGCUGUAACUUCCgcuauuaagauagc  u
|||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||  u
uaucgccauugauggcgu aguu uaucg cauug aggcgauaguucuaucgacauugaaggcgauaguucuaucg  a
                  c    c     u     a                                         ac 


Annotation confidence Not enough data
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Genome context
Chr4: 27044903-27045063 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR7526e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR7526e

Accession MIMAT0029346
Description Lotus japonicus lja-miR7526e mature miRNA
Sequence 43 - AUCAAGGUAGCUGUAACUUCC - 63
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154