Stem-loop lja-MIR7526f

Accession

MI0024406

Description

Lotus japonicus lja-MIR7526f precursor miRNA

Gene family

MIPF0001651; MIR7526

Sequence

cuuccgcuaucuuaauagcgguaacuaccgcuaucuuaguagcgguaacuaccgcaauuaaaauagcuguaacguccgcuAUCAAGGUAGCUGUAACUUCCgcuauuuuugucuaaugcucacguuuguuguguccgcuaucuugauagcggaaguuaccgcuaucuugauagcggaaguuacagcuaucaagauagcggaaguuaccgcuaucuugacugcgguaguuaccgcuaucuugauugcggaag
(((((((.(((...(((((((((((((((((..((...((((((((((((.((((.(((...(((((((((((.(((((((((((((((((.(((((((((((((((.........((..((((.....))))..)).......))))))))))))))).))))))))))))))))).)))))))))))...))).)))).))))))))))))...))..)))))))))))))))))...))).)))))))

Structure

       u   uua                 ua  uua            a    a   aaa           g                 U               uuugucuaa  cu    u 
cuuccgc auc   auagcgguaacuaccgc  uc   guagcgguaacu ccgc auu   auagcuguaac uccgcuAUCAAGGUAGC GUAACUUCCgcuauu         ug  cacg u
||||||| |||   |||||||||||||||||  ||   |||||||||||| |||| |||   ||||||||||| ||||||||||||||||| |||||||||||||||         ||  |||| u
gaaggcg uag   uaucgccauugauggcg  ag   uaucgccauuga ggcg uag   uaucgacauug aggcgauaguucuaucg cauugaaggcgauag         gc  gugu g
       u   uuc                 uc  uuc            a    a   aac           a                 c               --uucuauc  cu    u 

Annotation confidence Not enough data

Genome context

Chr4: 38981066-38981316 [-]

Mature lja-miR7526f

• Accession: MIMAT0029347
• Description: Lotus japonicus lja-miR7526f mature miRNA
• Sequence: 81 - AUCAAGGUAGCUGUAACUUCC - 101
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154