miRBase entry: lja-MIR7532b

Stem-loop lja-MIR7532b


Accession
MI0024415
Description
Lotus japonicus lja-MIR7532b precursor miRNA
Gene family
MIPF0001820; MIR7532


Sequence

cgggucgcauugguucugGAAGCUGCCUCUGGUCGUGGUuggcgcgguggucggcgcgcuacuucucgaccgagcaguucggagcaucuaccgaugcguguucccg
((((.((((((((((((((..(((((.((.(((((.((.(((((((........)))))))..)).)))))))))))))))))......)))))))))....))))

Structure
    ---u         ------     AA     C  U     U  -U       gug 
cggg    cgcauuggu      ucugG  GCUGC UC GGUCG GG  uggcgcg   g
||||    |||||||||      |||||  ||||| || ||||| ||  |||||||    
gccc    gcguagcca      aggcu  ugacg ag ccagc cu  aucgcgc   u
    uugu         ucuacg     --     -  -     u  uc       ggc 


Annotation confidence Not enough data
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Genome context
Chr1: 1352604-1352709 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR7532b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR7532b

Accession MIMAT0029356
Description Lotus japonicus lja-miR7532b mature miRNA
Sequence 19 - GAAGCUGCCUCUGGUCGUGGU - 39
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154