miRBase entry: lja-MIR7537

Stem-loop lja-MIR7537


Accession
MI0024422
Description
Lotus japonicus lja-MIR7537 precursor miRNA


Sequence

gcaacgguuucuaauuguguaaaauauuggaugguguuaaguucauucaugaacuUAGGAAAUACGCCUGCGGUUCCuaauuguguaaaauguuggucaaguuagacccuguagucagauaaaacauuagucacaaucagagaccauggagguguuuucuucuuuuagggacgaacuuaguacgaccccacauuuucagggaucaauuugc
((((.(((((((((.((((.........((.(.(((((((((((.(((.((((...(((((((((..(((.((((.((.((((((...((((((((((......))))(((....)))....))))))...)))))).)).)))).)))..)))))))))...)))).))).))))))))))).).)))))).))..)))))))...))))

Structure
    --c       --  u    uaaaauauu  a g           a   a    cuU         GC   C    C  a      uaa      --------------    aa 
gcaa   gguuucu  aa ugug         gg u guguuaaguuc uuc ugaa   AGGAAAUAC  CUG GGUU Cu auugug   aauguu              gguc  g
||||   |||||||  || ||||         || | ||||||||||| ||| ||||   |||||||||  ||| |||| || ||||||   ||||||              ||||   
cguu   cuaggga  uu acac         cc a caugauucaag agg auuu   ucuuuugug  ggu ccag ga uaacac   uuacaa              ccag  u
    uaa       cu  u    ---------  c g           c   g    ucu         ga   a    a  c      uga      aauagacugauguc    au 


Annotation confidence Not enough data
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Genome context
Chr1: 42455050-42455260 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR7537
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR7537

Accession MIMAT0029363
Description Lotus japonicus lja-miR7537 mature miRNA
Sequence 56 - UAGGAAAUACGCCUGCGGUUCC - 77
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154