Stem-loop lja-MIR7539

Accession

MI0024424

Description

Lotus japonicus lja-MIR7539 precursor miRNA

Sequence

aauugggguccuggguucgaagcuagcaUCGAGAGAGAGAGCGACGAGGauugauggaaguugauaaaaugagguauuucauaauaccucucuuuucauuuucauuuuggucccuuuauuucuuuuucauuuucauuuuggucccuuuauuucuuuu
....(((((...(((.((((((........((((((((((..((.(.((((((((((((((.((.(((..((((((((....))))))))..))))))))))))))..)))))).)).)))))))))).......)))))).)))...)))))....

Structure

aauu     ccu   u      cuagcaUC          GC  C A     --         u  u   au        u 
    ggggu   ggg ucgaag        GAGAGAGAGA  GA G GGauu  gauggaagu ga aaa  gagguauu c
    |||||   ||| ||||||        ||||||||||  || | |||||  ||||||||| || |||  ||||||||  
    cuuua   ccc gguuuu        cuuuuucuuu  uu c ccugg  uuacuuuua cu uuu  cuccauaa a
uuuu     uuu   u      -acuuuua          -a  u -     uu         -  -   cu        u 

Annotation confidence Not enough data

Genome context

Chr3: 46853980-46854136 [+]

Mature lja-miR7539

• Accession: MIMAT0029365
• Description: Lotus japonicus lja-miR7539 mature miRNA
• Sequence: 29 - UCGAGAGAGAGAGCGACGAGG - 49
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154