Stem-loop lja-MIR7544

Accession

MI0024430

Description

Lotus japonicus lja-MIR7544 precursor miRNA

Sequence

ggaaaaauguuagcgauacuuuguuuuuaacacuuucauuaucugguugaaaaucauguaaauauacuaaaaauaugaguuuuaauuucaauuuaauuagacauagauaaauuuuaaucaauuaaugaaagagugUUAGAAAGAAAAUGUUGUUAGCacucc
(((....(((((((((((.(((.((((((((((((((((((..((((((((((((((((.......((((((((.((((.......))))))))..)))))))).)))...)))))))))..))))))..)))))))))))).))).))))))))))).)))

Structure

   aaaa           c   g            --      uc         ---   -    aaauaua    --    a    uu 
gga    uguuagcgaua uuu uuuuuaacacuu  ucauua  ugguugaaa   auc augu       cuaa  aaau ugag  u
|||    ||||||||||| ||| ||||||||||||  ||||||  |||||||||   ||| ||||       ||||  |||| ||||  u
ccu    aCGAUUGUUGU AAA AAAGAUUgugag  aguaau  acuaauuuu   uag uaca       gauu  uuua acuu  a
   ---c           A   G            aa      ua         aaa   a    -------    aa    -    ua 

Annotation confidence Not enough data

Genome context

Chr2: 19489813-19489974 [+]

Mature lja-miR7544

• Accession: MIMAT0029371
• Description: Lotus japonicus lja-miR7544 mature miRNA
• Sequence: 136 - UUAGAAAGAAAAUGUUGUUAGC - 157
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154