miRBase entry: ipu-mir-196a-1

Stem-loop ipu-mir-196a-1


Accession
MI0024543
Description
Ictalurus punctatus ipu-mir-196a-1 precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

UAGGUAGUUUCAUGUUGUUGGGAuuggcuuccuggcucgacaacaagaaacugccuuga
.((((((((((.((((((((((...((...))...)))))))))).))))))))))...

Structure
--U          A          Auu  c 
   AGGUAGUUUC UGUUGUUGGG   gg  
   |||||||||| ||||||||||   || u
   uccgucaaag acaacagcuc   cc  
agu          a          ggu  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-miR-196a

Accession MIMAT0029448
Description Ictalurus punctatus ipu-miR-196a mature miRNA
Sequence 1 - UAGGUAGUUUCAUGUUGUUGGGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174