miRBase entry: ipu-mir-199a-4

Stem-loop ipu-mir-199a-4


Accession
MI0024549
Description
Ictalurus punctatus ipu-mir-199a-4 precursor miRNA
Gene family
MIPF0000040; mir-199


Sequence

CCCAGUGUUCAGACUACCUGUUCagggcguagagauuguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.(((..(.....).))).))))))))))).)))))))..

Structure
-C       U        C   U   gg g 
  CCAGUGU CAGACUAC UGU Cag  c u
  ||||||| |||||||| ||| |||  | a
  GGUUACA GUCUGAUG ACA guu  g g
UU       C        -   u   -a a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-miR-199a-5p

Accession MIMAT0029450
Description Ictalurus punctatus ipu-miR-199a-5p mature miRNA
Sequence 1 - CCCAGUGUUCAGACUACCUGUUC - 23
Evidence experimental
Illumina [1]

Mature ipu-miR-199a-3p

Accession MIMAT0031093
Description Ictalurus punctatus ipu-miR-199a-3p mature miRNA
Sequence 40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174