miRBase entry: ipu-mir-200a

Stem-loop ipu-mir-200a


Accession
MI0024554
Description
Ictalurus punctatus ipu-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

caucuuaccggacagugcuggacuguauaacuguuuucUAACACUGUCUGGUAACGAUG
(((((((((((((((((.((((..............)))).))))))))))))).))))

Structure
    -             c    cuguau 
cauc uuaccggacagug ugga      a
|||| ||||||||||||| ||||       
GUAG AAUGGUCUGUCAC AUcu      a
    C             A    uuuguc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-miR-200a

Accession MIMAT0029453
Description Ictalurus punctatus ipu-miR-200a mature miRNA
Sequence 39 - UAACACUGUCUGGUAACGAUG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174