miRBase entry: ipu-mir-7548

Stem-loop ipu-mir-7548


Accession
MI0024676
Description
Ictalurus punctatus ipu-mir-7548 precursor miRNA


Sequence

AGCCGCGGCUGUAGGAGCgacugaagaagagggggauggggacaauuguuuuuuguguugcauuccugcaguguguuuga
...((((.((((((((((((((((((((.((..(........)..)).))))))).)))))..)))))))))))).....

Structure
--AGC    G        --     -       g  gg gau 
     CGCG CUGUAGGA  GCgac ugaagaa ag  g   g
     |||| ||||||||  ||||| ||||||| ||  |    
     gugu gacguccu  cguug guuuuuu uu  c   g
aguuu    -        ua     u       g  aa agg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-miR-7548

Accession MIMAT0029540
Description Ictalurus punctatus ipu-miR-7548 mature miRNA
Sequence 1 - AGCCGCGGCUGUAGGAGC - 18
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174