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miRBase entry: ipu-mir-7568
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ipu-mir-7568
Accession
MI0024703
Description
Ictalurus punctatus
ipu-mir-7568 precursor miRNA
Literature search
1 open access papers
mention ipu-mir-7568
(2 sentences)
Sequence
Copy Sequence
ucagcuuucugucugucugucugucugucugaCUGACCGACCAAGUGCUGAAU
(((((.....(((.(((.(((.........))).))).))).....)))))..
Structure
-- uuucu u u ugu ucagc guc guc guc c ||||| ||| ||| ||| u AGUCG CAG CAG Cag g UA UGAAC C U ucu
Annotation confidence
Low
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Genome context
Unknown
Database links
References
PubMed ID:
23342099
Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
PLoS One (2013) 8:e54174