Stem-loop cbr-mir-2

Accession

MI0024743

Description

Caenorhabditis briggsae cbr-mir-2 precursor miRNA

Literature search

3 open access papers mention cbr-mir-2
(7 sentences)

Sequence

16174 reads, 1962.0 reads per million, 3 experiments

CCGUCAAAGUGGUGUGUGUUAUGccgcauaagugaacuucuuuucggaaguuuugguucaUAUCACAGCCAGCUUUGAUGUGC
.((((((((((((.((((.(((((((.......((((((((....)))))))))))..)))).)))))))).))))))))...

Structure

--C        -    G    U    --   cauaagu        u 
   CGUCAAAG UGGU UGUG UAUG  ccg       gaacuucu u
   |||||||| |||| |||| ||||  |||       ||||||||  
   GUAGUUUC ACCG ACAC AUac  ggu       uuugaagg u
CGU        G    -    U    uu   -------        c 

Annotation confidence High

Genome context

chrI: 2714104-2714186 [-]

Mature cbr-miR-2-5p

• Accession: MIMAT0053595
• Description: Caenorhabditis briggsae cbr-miR-2-5p mature miRNA
• Sequence: 1 - CCGUCAAAGUGGUGUGUGUUAUG - 23
• Evidence: experimental ; Illumina [1]

Mature cbr-miR-2-3p

• Accession: MIMAT0029606
• Description: Caenorhabditis briggsae cbr-miR-2-3p mature miRNA
• Sequence: 61 - UAUCACAGCCAGCUUUGAUGUGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508