Stem-loop sequence cbr-mir-124c

Accession

MI0024745 (change log)

Description

Caenorhabditis briggsae miR-124c stem-loop

Literature search

2 open access papers mention cbr-mir-124c
(21 sentences)

Stem-loop

   --     a    c    a       a   aac 
5'   acggc uugg agug ccuuaau gag   a
     ||||| |||| |||| ||||||| |||   g
3'   ugccg aacc ucac ggaauua cuc   u
   ca     -    u    -       -   aac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CB4; GCA_000004555.3): chrX: 1609141-1609202 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cbr-mir-124c

• cbr-mir-124c: chrX: 1609141-1609202 [-]
• cbr-mir-124b: chrX: 1605243-1605305 [-]

Database links

• miRBase Tracker:MI0024745

Mature sequence cbr-miR-124c

• Accession: MIMAT0029608
• Sequence: 42 - uaaggcacuuccaagccguac - 62
• Evidence: experimental; Illumina [1]

References

1. PMID:23363624 "High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes" Shi Z, Montgomery TA, Qi Y, Ruvkun G Genome Res. 23:497-508(2013).