miRBase entry: crm-mir-56

Stem-loop crm-mir-56

Accession

MI0024774

Description

Caenorhabditis remanei crm-mir-56 precursor miRNA

Gene family

MIPF0001735; mir-56

Sequence

uggcgaauccauuccggguguaccucacagcaauccugacggUACCCGUAAUGCUUCCGCUGAG
.((((.(..((((.(((((..((((((.........))).)))))))).))))..).))))...

Structure

--u    a uc    c     gu   -   cag 
   ggcg a  cauu cgggu  acc uca   c
   |||| |  |||| |||||  ||| |||   a
   UCGC U  GUAA GCCCA  Ugg agu   a
GAG    C UC    U     --   c   ccu

Annotation confidence Not enough data

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Genome context

Crem_Contig43: 489346-489409 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from crm-mir-56

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature crm-miR-56

Accession	MIMAT0029635
Description	Caenorhabditis remanei crm-miR-56 mature miRNA
Sequence	43 - UACCCGUAAUGCUUCCGCUGAG - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508