miRBase entry: crm-mir-2229b

Stem-loop crm-mir-2229b

Accession

MI0024788

Description

Caenorhabditis remanei crm-mir-2229b precursor miRNA

Gene family

MIPF0001694; mir-2229

Sequence

acaguuuucucagggcuuugaacgcucacugaaaaacguUGAAAGACUGAAGAGUACUGUGA
(((((.(((((((..((((.((((............)))).)))).))).)))).)))))..

Structure

--     u    -   gg    g    cucac 
  acagu uucu cag  cuuu aacg     u
  ||||| |||| |||  |||| ||||      
  UGUCA GAGA GUC  GAAA Uugc     g
AG     U    A   -A    G    aaaaa

Annotation confidence Not enough data

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Genome context

Crem_Contig0: 2910105-2910166 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-2229b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature crm-miR-2229b

Accession	MIMAT0029649
Description	Caenorhabditis remanei crm-miR-2229b mature miRNA
Sequence	40 - UGAAAGACUGAAGAGUACUGUGA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508