miRBase entry: cbn-mir-48-1

Stem-loop cbn-mir-48-1

Accession

MI0024827

Description

Caenorhabditis brenneri cbn-mir-48-1 precursor miRNA

Gene family

MIPF0000235; mir-48

Sequence

UGAGGUAGGCUCAGUAGAUGCGAacguaaaugagcccacaucggccuuucacauccacuugccuuccucgcc
.((((.((((..(((.((((.(((.(.......(((......)))).))).)))).))).)))).))))...

Structure

--U    U    UC   A    C   c uaaauga   ca 
   GAGG AGGC  AGU GAUG GAa g       gcc  c
   |||| ||||  ||| |||| ||| |       |||   
   cucc uccg  uca cuac cuu c       cgg  a
ccg    u    -u   c    a   u -------   cu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

Cbre_Contig123: 222832-222903 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-48-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-48

Accession	MIMAT0029683
Description	Caenorhabditis brenneri cbn-miR-48 mature miRNA
Sequence	1 - UGAGGUAGGCUCAGUAGAUGCGA - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508