miRBase entry: cbn-mir-52-1

Stem-loop cbn-mir-52-1


Accession
MI0024833
Description
Caenorhabditis brenneri cbn-mir-52-1 precursor miRNA
Gene family
MIPF0000160; mir-52


Sequence

CACCCGUACAUAUGUUUCCGUGCUugacaaugaguucaaucacgucacaauuuaugggucg
.(((((((.((.(((...((((.((((........)))).))))..))))).)))))))..

Structure
-C       C  A   UUC    C    caa 
  ACCCGUA AU UGU   CGUG Uuga   u
  ||||||| || |||   |||| ||||    
  uggguau ua aca   gcac aacu   g
gc       u  -   -cu    u    uga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Cbre_Contig147: 145718-145778 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cbn-mir-52-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-52

Accession MIMAT0029686
Description Caenorhabditis brenneri cbn-miR-52 mature miRNA
Sequence 1 - CACCCGUACAUAUGUUUCCGUGCU - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508