miRBase entry: cbn-mir-64j-1

Stem-loop cbn-mir-64j-1


Accession
MI0024848
Description
Caenorhabditis brenneri cbn-mir-64j-1 precursor miRNA
Gene family
MIPF0000295; mir-64


Sequence

GAUGACACUUGUAUAGUCACGGUUGuucucuaaauuuucaaccugccuaucuugugccauag
.(((.(((..(.((((.((.(((((.............))))))).)))))..))).)))..

Structure
-G   A   UU U    U  C     uucuc 
  AUG CAC  G AUAG CA GGUUG     u
  ||| |||  | |||| || |||||     a
  uac gug  c uauc gu ccaac     a
ga   c   uu -    c  -     uuuua 


Annotation confidence Not enough data
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Genome context
Cbre_Contig274: 39823-39884 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from cbn-mir-64j-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-64j

Accession MIMAT0029698
Description Caenorhabditis brenneri cbn-miR-64j mature miRNA
Sequence 1 - GAUGACACUUGUAUAGUCACGGUUG - 25
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508