miRBase entry: cbn-mir-64d-1

Stem-loop cbn-mir-64d-1


Accession
MI0024853
Description
Caenorhabditis brenneri cbn-mir-64d-1 precursor miRNA
Gene family
MIPF0000295; mir-64


Sequence

UAUGACACAUAAGCGUAGUUGGAccauccaagaacauaggauccaaccaugauauguggaauagu
(((..((((((..(((.((((((...(((.........))))))))).))).))))))..)))..

Structure
--   GA      AG   A      cca   aag 
  UAU  CACAUA  CGU GUUGGA   ucc   a
  |||  ||||||  ||| ||||||   |||   a
  aua  guguau  gua caaccu   agg   c
ug   ag      -a   c      ---   aua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Cbre_Contig274: 39055-39119 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from cbn-mir-64d-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-64d

Accession MIMAT0029703
Description Caenorhabditis brenneri cbn-miR-64d mature miRNA
Sequence 1 - UAUGACACAUAAGCGUAGUUGGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508