Stem-loop cbn-mir-43-2

Accession

MI0024894

Description

Caenorhabditis brenneri cbn-mir-43-2 precursor miRNA

Gene family

MIPF0000234; mir-43

Sequence

gauaucaaggaacuugugauuuaugccauaacuaacauaaccucgacaUAUCACAGUUUACUUGCUGUCGC
((((.(((((((((.((((((((((..........))))).........)))))))))).)))).))))..

Structure

--    u    -     u     ---------     ccau 
  gaua caag gaacu gugau         uuaug    a
  |||| |||| ||||| |||||         |||||     
  CUGU GUUC UUUGA CACUA         aauac    a
CG    C    A     -     Uacagcucc     aauc 

Annotation confidence Not enough data

Genome context

Cbre_Contig900: 5820-5890 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-43-2

Mature cbn-miR-43

• Accession: MIMAT0029724
• Description: Caenorhabditis brenneri cbn-miR-43 mature miRNA
• Sequence: 49 - UAUCACAGUUUACUUGCUGUCGC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508