miRBase entry: cbn-mir-250-2

Stem-loop cbn-mir-250-2


Accession
MI0024896
Description
Caenorhabditis brenneri cbn-mir-250-2 precursor miRNA
Gene family
MIPF0000283; mir-250


Sequence

ccggcaguugccuguugauccgccgcaauuaugauggacgAAUCACAGUCAACUGUUGGCA
((((((((((.((((.(((.(((((((....)).))).)).))))))).))))))))))..

Structure
--          c    u   c  -   -  a 
  ccggcaguug cugu gau cg ccg ca u
  |||||||||| |||| ||| || ||| ||  
  GGUUGUCAAC GACA CUA gc ggu gu u
AC          U    -   A  a   a  a 


Annotation confidence Not enough data
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Genome context
Cbre_Contig97: 318894-318954 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cbn-mir-250-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-250

Accession MIMAT0029725
Description Caenorhabditis brenneri cbn-miR-250 mature miRNA
Sequence 41 - AAUCACAGUCAACUGUUGGCA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508