miRBase entry: cbn-mir-239b

Stem-loop cbn-mir-239b


Accession
MI0024898
Description
Caenorhabditis brenneri cbn-mir-239b precursor miRNA


Sequence

UUUGUACUUCACAAGAGUACUGgcgguucagguccggcucagaacuuuuguggggugcaaga
((((((((((((((((((.(((((((.......)).)).))).)))))))))))))))))).

Structure
-                  A   -  -  uu 
 UUUGUACUUCACAAGAGU CUG gc gg  c
 |||||||||||||||||| ||| || ||  a
 gaacgugggguguuuuca gac cg cc  g
a                  a   u  g  ug 


Annotation confidence Not enough data
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Genome context
Cbre_Contig21: 126207-126268 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cbn-mir-239b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-239b

Accession MIMAT0029727
Description Caenorhabditis brenneri cbn-miR-239b mature miRNA
Sequence 1 - UUUGUACUUCACAAGAGUACUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508