miRBase entry: cbn-mir-239c-1

Stem-loop cbn-mir-239c-1


Accession
MI0024900
Description
Caenorhabditis brenneri cbn-mir-239c-1 precursor miRNA
Gene family
MIPF0000135; mir-239


Sequence

UUUGUACUAAACAUAGGUACUGAaauaaaauauuuuauuuacucaguuccuagucuagugcaaggg
(((((((((.((.((((.(((((((((((....))))))...))))).)))))).)))))))))..

Structure
--         A  A    U     ---      a 
  UUUGUACUA AC UAGG ACUGA   aauaaa u
  ||||||||| || |||| |||||   ||||||  
  gaacgugau ug aucc ugacu   uuauuu a
gg         c  -    u     cau      u 


Annotation confidence Not enough data
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Genome context
Cbre_Contig205: 208108-208173 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from cbn-mir-239c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-239c

Accession MIMAT0029729
Description Caenorhabditis brenneri cbn-miR-239c mature miRNA
Sequence 1 - UUUGUACUAAACAUAGGUACUGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508