Stem-loop cbn-mir-239d-1

Accession

MI0024902

Description

Caenorhabditis brenneri cbn-mir-239d-1 precursor miRNA

Gene family

MIPF0000135; mir-239

Sequence

UUUGUACCGAUUAUAGGCAACUGAuuuuugaacguuuucagugccuauuucaguacaaua
.((((((.((..(((((((.((((.............))))))))))).)).))))))..

Structure

-U      C  UU       A    uuuuu 
  UUGUAC GA  AUAGGCA CUGA     g
  |||||| ||  ||||||| ||||     a
  aacaug cu  uauccgu gacu     a
au      a  -u       -    uuugc 

Annotation confidence Not enough data

Genome context

Cbre_Contig205: 208242-208301 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbn-mir-239d-1

Mature cbn-miR-239d

• Accession: MIMAT0029730
• Description: Caenorhabditis brenneri cbn-miR-239d mature miRNA
• Sequence: 1 - UUUGUACCGAUUAUAGGCAACUGA - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508