miRBase entry: cbn-mir-90

Stem-loop cbn-mir-90

Accession

MI0024905

Description

Caenorhabditis brenneri cbn-mir-90 precursor miRNA

Gene family

MIPF0000221; mir-90

Sequence

ggcuuucaacaacgauaucaaccgauuuucaguaaauugcgaguUGAUAUGUUGUUUGAAUGCCCC
(((.(((((((((.((((((((((((((.....))))))...)))))))))))).))))).)))..

Structure

--   u     -    g        ---      u 
  ggc uucaa caac auaucaac   cgauuu c
  ||| ||||| |||| ||||||||   |||||| a
  CCG AAGUU GUUG UAUAGUug   guuaaa g
CC   U     U    -        agc      u

Annotation confidence Not enough data

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Genome context

Cbre_Contig7: 1135033-1135098 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-90

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-90

Accession	MIMAT0029732
Description	Caenorhabditis brenneri cbn-miR-90 mature miRNA
Sequence	45 - UGAUAUGUUGUUUGAAUGCCCC - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508