miRBase entry: cbn-mir-1824b

Stem-loop cbn-mir-1824b

Accession

MI0024912

Description

Caenorhabditis brenneri cbn-mir-1824b precursor miRNA

Sequence

aggaccaucucucuccugccccacuuaucccuuugguauauaagUGGCAGUGAUUGAGAUUGUUCUAA
(((((.(((((..(((((((..((((((.((...))...))))))))))).))..))))).)))))..

Structure

--     c     uc  -     cc      --c  u 
  aggac aucuc  uc cugcc  acuuau   cc  
  ||||| |||||  || |||||  ||||||   || u
  UCUUG UAGAG  AG GACGG  Ugaaua   gg  
AA     U     UU  U     --      uau  u

Annotation confidence Not enough data

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Genome context

Cbre_Contig205: 202140-202207 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbn-mir-1824b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-1824b

Accession	MIMAT0029737
Description	Caenorhabditis brenneri cbn-miR-1824b mature miRNA
Sequence	45 - UGGCAGUGAUUGAGAUUGUUCUAA - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508