Stem-loop cbn-mir-228-1

Accession

MI0024935

Description

Caenorhabditis brenneri cbn-mir-228-1 precursor miRNA

Gene family

MIPF0000292; mir-228

Sequence

AAUGGCACUGCAUGAAUUCACGGaugcauugcgacagaccgcggaucaugcgguaccauag
.((((.(((((((((.(((.(((.((........))..))).)))))))))))).))))..

Structure

-A    C         A   A   -a  cau 
  AUGG ACUGCAUGA UUC CGG  ug   u
  |||| ||||||||| ||| |||  ||    
  uacc uggcguacu agg gcc  ac   g
ga    a         -   c   ag  agc 

Annotation confidence Not enough data

Genome context

Cbre_Contig521: 31336-31396 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-228-1

Mature cbn-miR-228

• Accession: MIMAT0029753
• Description: Caenorhabditis brenneri cbn-miR-228 mature miRNA
• Sequence: 1 - AAUGGCACUGCAUGAAUUCACGG - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508