Stem-loop sequence mmu-mir-129b

Accession

MI0025019 (change log)

Symbol

MGI:Mir129b

Description

Mus musculus miR-129b stem-loop

Gene family

MIPF0000073; mir-129

Literature search

51 open access papers mention mmu-mir-129b
(507 sentences)

Stem-loop

   --g       g   aa      c --g  uauu 
5'    cuuuuug ggu  gggcuu c   gc    g
      ||||||| |||  |||||| |   ||    a
3'    gaaaaac cca  cccgaa g   ug    g
   uua       g   ga      c aca  uauu 

Deep sequencing

148 reads, 0 reads per million, 24 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 94241378-94241442 [+]
• Overlapping transcripts:

  antisense

  ENSMUST00000083577 ; Mir129-2-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-129b

• mmu-mir-129-2: chr2: 94241364-94241453 [-]
• mmu-mir-129b: chr2: 94241378-94241442 [+]

Database links

• MGI:Mir129b
• miRBase Tracker:MI0025019

Mature sequence mmu-miR-129b-5p

• Accession: MIMAT0029862
• Sequence: 1 - gcuuuuugggguaagggcuucc - 22
• Deep sequencing: 76 reads, 14 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-129b-5p
  • miRDB:mmu-miR-129b-5p

Mature sequence mmu-miR-129b-3p

• Accession: MIMAT0029863
• Sequence: 43 - caagcccagaccgcaaaaagauu - 65
• Deep sequencing: 70 reads, 15 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-129b-3p
  • miRDB:mmu-miR-129b-3p

References

1. PMID:23325850 "Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues" Castellano L, Stebbing J Nucleic Acids Res. 41:3339-3351(2013).