miRBase entry: mmu-mir-129b

Stem-loop mmu-mir-129b


Accession
MI0025019
Symbol
MGI: Mir129b
Description
Mus musculus mmu-mir-129b precursor miRNA
Gene family
MIPF0000073; mir-129

Literature search
51 open access papers mention mmu-mir-129b
(513 sentences)

Sequence

167580 reads, 9 reads per million, 100 experiments
GCUUUUUGGGGUAAGGGCUUCCggcuauugaguuauguacagCAAGCCCAGACCGCAAAAAGAUU
.(((((((.(((..((((((...(((..............)))))))))..))).)))))))...

Structure
--G       G   AA      CCg   auugag 
   CUUUUUG GGU  GGGCUU   gcu      u
   ||||||| |||  ||||||   |||       
   GAAAAAC CCA  CCCGAA   Cga      u
UUA       G   GA      ---   caugua 


Annotation confidence Not enough data
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Genome context
chr2: 94241378-94241442 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-129b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-129b-5p

Accession MIMAT0029862
Description Mus musculus mmu-miR-129b-5p mature miRNA
Sequence 1 - GCUUUUUGGGGUAAGGGCUUCC - 22
Evidence experimental
RNAseq [1]

Mature mmu-miR-129b-3p

Accession MIMAT0029863
Description Mus musculus mmu-miR-129b-3p mature miRNA
Sequence 43 - CAAGCCCAGACCGCAAAAAGAUU - 65
Evidence experimental
RNAseq [1]

References

  1. PubMed ID: 23325850
    Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
    "Castellano L, Stebbing J"
    "Nucleic Acids Res (2013) 41:3339-3351