miRBase entry: cbr-mir-35g-1

Stem-loop cbr-mir-35g-1


Accession
MI0025049
Description
Caenorhabditis briggsae cbr-mir-35g-1 precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

gcugguuuuuuuuuccgcggugauacuucaaugcgaauguguaUCACCGGGUAAAAACUGGUAGA
((((((((((....((.((((((((((((.....)))...))))))))))).))))))))))...

Structure
---          uuuu  g         ---   a 
   gcugguuuuu    cc cggugauac   uuc a
   ||||||||||    || |||||||||   ||| u
   UGGUCAAAAA    GG GCCACUaug   aag g
AGA          ---U  -         ugu   c 


Annotation confidence Not enough data
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Genome context
chrX: 15374481-15374545 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from cbr-mir-35g-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35g

Accession MIMAT0029919
Description Caenorhabditis briggsae cbr-miR-35g mature miRNA
Sequence 44 - UCACCGGGUAAAAACUGGUAGA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508