miRBase entry: cbn-mir-38-1

Stem-loop cbn-mir-38-1

Accession

MI0025058

Description

Caenorhabditis brenneri cbn-mir-38-1 precursor miRNA

Gene family

MIPF0001835; mir-38

Sequence

uccaguuuuuuuccgcgguaauaacgcgagcaaguccuaUCACCGGGAGAAAAACUGGAGU
((((((((((((((.((((.(((..((......))..))).))))))))))))))))))..

Structure

--              g    a   ac  ga 
  uccaguuuuuuucc cggu aua  gc  g
  |||||||||||||| |||| |||  ||   
  AGGUCAAAAAGAGG GCCA Uau  ug  c
UG              -    C   cc  aa

Annotation confidence Not enough data

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Genome context

Cbre_Contig28: 208336-208396 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cbn-mir-38-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-38

Accession	MIMAT0029926
Description	Caenorhabditis brenneri cbn-miR-38 mature miRNA
Sequence	40 - UCACCGGGAGAAAAACUGGAGU - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508