miRBase entry: cbn-mir-35a

Stem-loop cbn-mir-35a


Accession
MI0025060
Description
Caenorhabditis brenneri cbn-mir-35a precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

ugccaguuuuuaccgcugugauacuccaagagacgguuaUCACCGGGUGAAAAUUGGUAGA
((((((((((((((.(.((((((..((.......)).)))))).)))))))))))))))..

Structure
--              g u      cu  aa 
  ugccaguuuuuacc c gugaua  cc  g
  |||||||||||||| | ||||||  ||  a
  AUGGUUAAAAGUGG G CACUau  gg  g
AG              - C      -u  ca 


Annotation confidence Not enough data
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Genome context
Cbre_Contig28: 208614-208674 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cbn-mir-35a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-35a

Accession MIMAT0029928
Description Caenorhabditis brenneri cbn-miR-35a mature miRNA
Sequence 40 - UCACCGGGUGAAAAUUGGUAGA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508