Stem-loop cbn-mir-35d

Accession

MI0025063

Description

Caenorhabditis brenneri cbn-mir-35d precursor miRNA

Gene family

MIPF0001648; mir-35_2

Sequence

agcugguuucuucuucggugauaauuccauugagugucuaUCACCGGGAGUAAUUGGCUCG
((((((((.((((..((((((((((((....))))...)))))))))))).))))))))..

Structure

--        u    uu        ---    c 
  agcugguu cuuc  cggugaua   auuc a
  |||||||| ||||  ||||||||   ||||  
  UCGGUUAA GAGG  GCCACUau   ugag u
GC        U    --        cug    u 

Annotation confidence Not enough data

Genome context

Cbre_Contig34: 781205-781265 [-]

Clustered miRNAs

19 other miRNAs are < 10 kb from cbn-mir-35d

Mature cbn-miR-35d

• Accession: MIMAT0029931
• Description: Caenorhabditis brenneri cbn-miR-35d mature miRNA
• Sequence: 41 - UCACCGGGAGUAAUUGGCUCG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508