Stem-loop cbn-mir-35j

Accession

MI0025070

Description

Caenorhabditis brenneri cbn-mir-35j precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

ugcuguucuuugcugcugugauauuucugagucgugauuaUCACCGGGCGAAUAUCGGCACA
(((((...((((((...((((((..((........)).))))))..))))))...)))))..

Structure

--     uuc      gcu      uu  uga 
  ugcug   uuugcu   gugaua  uc   g
  |||||   ||||||   ||||||  ||    
  ACGGC   AAGCGG   CACUau  ag   u
AC     UAU      -GC      -u  ugc 

Annotation confidence Not enough data

Genome context

Cbre_Contig34: 783788-783849 [-]

Clustered miRNAs

19 other miRNAs are < 10 kb from cbn-mir-35j

Mature cbn-miR-35j

• Accession: MIMAT0029937
• Description: Caenorhabditis brenneri cbn-miR-35j mature miRNA
• Sequence: 41 - UCACCGGGCGAAUAUCGGCACA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508