miRBase entry: cbn-mir-35k

Stem-loop cbn-mir-35k

Accession

MI0025072

Description

Caenorhabditis brenneri cbn-mir-35k precursor miRNA

Gene family

MIPF0001648; mir-35_2

Sequence

agcucauuucucuacuggugauaaauccgauaguagugcuuaUCACCGGGAGUAAAUGUGCUCU
(((.((((((((..((((((((((...............))))))))))))).))))).)))..

Structure

--   u     -   ua          auccga 
  agc cauuu cuc  cuggugauaa      u
  ||| ||||| |||  ||||||||||      a
  UCG GUAAA GAG  GGCCACUauu      g
UC   U     U   --          cgugau

Annotation confidence Not enough data

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Genome context

Cbre_Contig34: 784282-784345 [-]

Clustered miRNAs

19 other miRNAs are < 10 kb from cbn-mir-35k

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35k

Accession	MIMAT0029938
Description	Caenorhabditis brenneri cbn-miR-35k mature miRNA
Sequence	43 - UCACCGGGAGUAAAUGUGCUCU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508