Stem-loop cbn-mir-35l

Accession

MI0025073

Description

Caenorhabditis brenneri cbn-mir-35l precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

ugcugauuuuugccacggugauauuucuaaauuaugacuaUCACCGGGUGGAAAUUUGGCACA
((((((((((((((.((((((((..((........)).)))))))))))))))).))))))..

Structure

--      -        a        uu  uaa 
  ugcuga uuuuugcc cggugaua  uc   a
  |||||| |||||||| ||||||||  ||    
  ACGGUU AAAGGUGG GCCACUau  ag   u
AC      U        -        -c  uau 

Annotation confidence Not enough data

Genome context

Cbre_Contig34: 784378-784440 [-]

Clustered miRNAs

19 other miRNAs are < 10 kb from cbn-mir-35l

Mature cbn-miR-35l

• Accession: MIMAT0029939
• Description: Caenorhabditis brenneri cbn-miR-35l mature miRNA
• Sequence: 41 - UCACCGGGUGGAAAUUUGGCACA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508