miRBase entry: cbn-mir-35f-2

Stem-loop cbn-mir-35f-2


Accession
MI0025075
Description
Caenorhabditis brenneri cbn-mir-35f-2 precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

ugcugguuuccgccacggugauauuucugagucaugauuaUCACCGGGUGAAAAUACGGCACA
(((((((((.((((.((((((((..((........)).)))))))))))).)))).)))))..

Structure
--     -    c    a        uu  uga 
  ugcug guuu cgcc cggugaua  uc   g
  ||||| |||| |||| ||||||||  ||    
  ACGGC UAAA GUGG GCCACUau  ag   u
AC     A    A    -        -u  uac 


Annotation confidence Not enough data
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Genome context
Cbre_Contig34: 784832-784894 [-]
Clustered miRNAs
19 other miRNAs are < 10 kb from cbn-mir-35f-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-35f

Accession MIMAT0029933
Description Caenorhabditis brenneri cbn-miR-35f mature miRNA
Sequence 41 - UCACCGGGUGAAAAUACGGCACA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508