miRBase entry: cbn-mir-35m

Stem-loop cbn-mir-35m

Accession

MI0025078

Description

Caenorhabditis brenneri cbn-mir-35m precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

ugcuguuuuuugcugcggugauaucuccgagucgugauuaUCACCGGGCGAACAUCGGCACA
(((((...((((((.((((((((..((((...)).)).))))))))))))))...)))))..

Structure

--     uuu      g        uc  -  a 
  ugcug   uuugcu cggugaua  uc cg  
  |||||   |||||| ||||||||  || || g
  ACGGC   AAGCGG GCCACUau  ag gc  
AC     UAC      -        -u  u  u

Annotation confidence Not enough data

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Genome context

Cbre_Contig34: 785592-785653 [-]

Clustered miRNAs

18 other miRNAs are < 10 kb from cbn-mir-35m

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35m

Accession	MIMAT0029940
Description	Caenorhabditis brenneri cbn-miR-35m mature miRNA
Sequence	41 - UCACCGGGCGAACAUCGGCACA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508